Daily Monkeypox Case Characteristics and Trends
Patient Health Records & Digital Health
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An ongoing outbreak of the viral disease monkeypox was confirmed in May 2022, initiating with a cluster of cases detected in the United Kingdom. This daily summary provides synthesised epidemiological data to track the characteristics of cases globally, aiding in the quick awareness necessary to halt the spread of this low-risk epidemic. The dataset aggregates case details to overcome the challenge of obtaining reliable data during the early stages of an outbreak.
Columns
- ID: Unique Identifier for the case record.
- Status: Classification of the case (e.g., confirmed, suspected).
- Location: Geographic location of the case.
- City: Specific city where the subject was registered.
- Country: Country where the case was reported.
- Country_ISO3: Three-letter alphabet code for the country.
- Age: Age of the subject.
- Gender: Sex of the subject.
- Date_onset: Date when the infection started.
- Date_confirmation: Date when the infection was confirmed.
- Symptoms: Clinical symptoms observed in the patient (e.g., genital ulcer lesions).
- Hospitalised (Y/N/NA): Boolean indicating if the patient was hospitalised.
- Date_hospitalisation: Date of hospital admission.
- Isolated (Y/N/NA): Boolean indicating if the patient was isolated.
- Date_isolation: Date when isolation began.
- Outcome: Clinical outcome of the case (e.g., Death).
- Contact_comment: Context regarding contact tracing (e.g., Under investigation).
- Contact_ID: Identifier for the contact.
- Contact_location: Location where contact occurred (e.g., Household).
- Travel_history (Y/N/NA): Boolean indicating if the patient has a travel history.
- Travel_history_entry: Date of entry related to travel history.
- Travel_history_start: Start date of the travel history.
- Travel_history_location: General location of travel (e.g., Europe).
- Travel_history_country: Specific country visited during travel.
- Genomics_Metadata: Metadata regarding the genomic clade (e.g., West African Clade).
- Confirmation_method: Test used for confirmation (e.g., RT-PCR).
- Source: Primary URL source of the data.
- Source_II - Source_VII: Additional data sources used for verification or supplementation.
- Date_entry: Date the record was entered.
- Date_last_modified: Date the record was last modified.
Distribution
The dataset is formatted as a tabular CSV file (
latest.csv) with a file size of approximately 3.97 MB. It contains 17,865 unique records (IDs) across 35 columns. The data exhibits varying degrees of completeness; while fields like Country and Status are 100% valid, others such as Symptoms and Travel History have high null values (98-99%), reflecting the challenges of real-time epidemiological data collection.Usage
- Time Series Analysis: Tracking the progression of confirmed cases over time.
- Spatial Analysis: Mapping the global spread of the virus using Country and City data.
- Epidemiological Modelling: Analysing demographics (Age, Gender) and outcomes to understand risk factors.
- Public Health Response: Monitoring hospitalisation and isolation rates to manage resource allocation.
Coverage
- Geographic: Global coverage with data from 98 unique countries. The most common entries originate from Spain (19%) and the United States (14%).
- Temporal: The outbreak tracking begins in May 2022, with case confirmations and entry dates continuing through July 2022.
- Demographic: Includes Age and Gender data, though with significant missing values. The available data indicates a prevalence in the 20-69 age group and male gender.
License
CC0: Public Domain
Who Can Use It
- Epidemiologists: For tracking disease vectors and outbreak patterns.
- Data Journalists: To visualise the spread and impact of the virus for public awareness.
- Public Health Officials: For situational awareness and policy planning.
- Academic Researchers: For viral transmission studies and genomic metadata analysis.
Dataset Name Suggestions
- Global Monkeypox Epidemiological Daily Summary
- Worldwide Monkeypox Outbreak Tracker 2022
- Daily Monkeypox Case Characteristics and Trends
Attributes
Original Data Source: Daily Monkeypox Case Characteristics and Trends
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